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bedops

Tools for high-performance genomic feature operations

BEDOPS is a suite of tools to address common questions raised in genomic studies---mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data.

BEDOPS provides tools that perform highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

Installation

Install the latest version of bedops as follows:

guix install bedops

Or install a particular version:

guix install bedops@2.4.41

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.

Badge code

You can use the following badge to inform users of bedops about the latest version available in Guix.

Example HTML:

<a href='https://packages.guix.gnu.org/packages/bedops'><img src='https://packages.guix.gnu.org/packages/bedops/badges/latest-version.svg' alt='Version in GNU Guix'></a>

Example Markdown:

[![Version in GNU Guix](https://packages.guix.gnu.org/packages/bedops/badges/latest-version.svg)](https://packages.guix.gnu.org/packages/bedops)

Example Org:

[[https://packages.guix.gnu.org/packages/bedops][https://packages.guix.gnu.org/packages/bedops/badges/latest-version.svg]]