bedtools

Tools for genome analysis and arithmetic

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.

Versions: 2.30.0 · 2.18.0
Website: https://github.com/arq5x/bedtools2
Licenses: Expat
Package source: gnu/packages/bioinformatics.scm
Builds: See build status
Issues: See known issues

Installation

Install the latest version of bedtools as follows:

guix install bedtools

Or install a particular version:

guix install bedtools@2.18.0

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.

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