bedtools
Tools for genome analysis and arithmetic
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
- Versions: 2.31.1 · 2.18.0
- Website: https://github.com/arq5x/bedtools2
- Licenses: Expat
- Package source: gnu/packages/bioinformatics.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of bedtools as follows:
guix install bedtools
Or install a particular version:
guix install bedtools@2.18.0
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
Badge code
You can use the following badge to inform users of bedtools about the latest version available in Guix.
Example HTML:
<a href='https://packages.guix.gnu.org/packages/bedtools'><img src='https://packages.guix.gnu.org/packages/bedtools/badges/latest-version.svg' alt='Version in GNU Guix'></a>
Example Markdown:
[](https://packages.guix.gnu.org/packages/bedtools)
Example Org:
[[https://packages.guix.gnu.org/packages/bedtools][https://packages.guix.gnu.org/packages/bedtools/badges/latest-version.svg]]