bio-blastxmlparser

Fast big data BLAST XML parser and library

Very fast parallel big-data BLAST XML file parser which can be used as command line utility. Use blastxmlparser to: Parse BLAST XML; filter output; generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.

Versions: 2.0.4
Website: https://github.com/pjotrp/blastxmlparser
Licenses: Expat
Package source: gnu/packages/bioinformatics.scm
Builds: See build status
Issues: See known issues

Installation

Install the latest version of bio-blastxmlparser as follows:

guix install bio-blastxmlparser

Or install a particular version:

guix install bio-blastxmlparser@2.0.4

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.