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Java API for high-throughput sequencing data (HTS) formats

HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM and VCF, used for high-throughput sequencing (HTS) data. There are also an number of useful utilities for manipulating HTS data.


Install the latest version of java-htsjdk as follows:

guix install java-htsjdk

Or install a particular version:

guix install java-htsjdk@2.10.1

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.