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java-picard

Tools for manipulating high-throughput sequencing data and formats

Picard is a set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats. Picard is implemented using the HTSJDK Java library to support accessing file formats that are commonly used for high-throughput sequencing data such as SAM, BAM, CRAM and VCF.

Installation

Install the latest version of java-picard as follows:

guix install java-picard

Or install a particular version:

guix install java-picard@1.113

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.