r-affxparser 1.80.0

Affymetrix File Parsing SDK

This is a package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Outputs: out
Website: https://github.com/HenrikBengtsson/affxparser
Licenses: GPL 2 · LGPL 2.0+ · LGPL 2.1
Package source: gnu/packages/bioconductor.scm
Builds: See build status
Issues: See known issues

Installation

Install r-affxparser 1.80.0 as follows:

guix install r-affxparser@1.80.0

Or install the latest version:

guix install r-affxparser

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.