Automated analysis of CRISPR experiments
The package performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents the results in the form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.
- Versions: 1.22.1
- Website: https://github.com/valenlab/amplican
- Licenses: GPL 3
- Package source: gnu/packages/bioconductor.scm
- Builds: See build status
- Issues: See known issues
Install the latest version of
r-amplican as follows:
guix install r-amplican
Or install a particular version:
guix install firstname.lastname@example.org
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the
guix shell documentation for more information.