r-amplican

Automated analysis of CRISPR experiments

The package performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents the results in the form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.

Versions: 1.22.1
Website: https://github.com/valenlab/amplican
Licenses: GPL 3
Package source: gnu/packages/bioconductor.scm
Builds: See build status
Issues: See known issues

Installation

Install the latest version of r-amplican as follows:

guix install r-amplican

Or install a particular version:

guix install r-amplican@1.22.1

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.