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r-amplican 1.20.0

Automated analysis of CRISPR experiments

The package performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents the results in the form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.

Installation

Install r-amplican 1.20.0 as follows:

guix install r-amplican@1.20.0

Or install the latest version:

guix install r-amplican

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.