r-gsva 2.4.1

Gene Set Variation Analysis for microarray and RNA-seq data

Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene-set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross-tissue pathway analysis, in a pathway-centric manner.

Outputs: out
Website: https://github.com/rcastelo/GSVA
Licenses: GPL 2+
Package source: gnu/packages/bioconductor.scm
Builds: See build status
Issues: See known issues

Installation

Install r-gsva 2.4.1 as follows:

guix install r-gsva@2.4.1

Or install the latest version:

guix install r-gsva

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.