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sylamer 18-131

Asses microRNA binding and siRNA off-target effects

Sylamer is a system for finding significantly over or under-represented words in sequences according to a sorted gene list. Typically it is used to find significant enrichment or depletion of microRNA or siRNA seed sequences from microarray expression data. Sylamer is extremely fast and can be applied to genome-wide datasets with ease. Results are plotted in terms of a significance landscape plot. These plots show significance profiles for each word studied across the sorted genelist.

Installation

Install sylamer 18-131 as follows:

guix install sylamer@18-131

Or install the latest version:

guix install sylamer

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting you user profile. See the guix shell documentation for more information.