tophat 2.1.1

Spliced read mapper for RNA-Seq data

TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.

Outputs: out
Website: https://ccb.jhu.edu/software/tophat/index.shtml
Licenses: Boost 1.0
Package source: gnu/packages/bioinformatics.scm
Builds: See build status
Issues: See known issues

Installation

Install tophat 2.1.1 as follows:

guix install tophat@2.1.1

Or install the latest version:

guix install tophat

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.