biobambam2 2.0.182
Tools for processing BAM files
This package contains some tools for processing BAM files including:
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or query name
bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name.
- Website: https://gitlab.com/german.tischler/biobambam2
- Licenses: GPL 3+
- Package source: gnu/packages/bioinformatics.scm
- Builds: See build status
- Issues: See known issues
Installation
Install biobambam2 2.0.182
as follows:
guix install biobambam2@2.0.182
Or install the latest version:
guix install biobambam2
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell
documentation for more information.