phyml
Programs for working on SAM/BAM files
PhyML is a software package that uses modern statistical approaches to analyse alignments of nucleotide or amino acid sequences in a phylogenetic framework. The main tool in this package builds phylogenies under the maximum likelihood criterion. It implements a large number of substitution models coupled with efficient options to search the space of phylogenetic tree topologies. codePhyREX fits the spatial-Lambda-Fleming-Viot model to geo-referenced genetic data. This model is similar to the structured coalescent but assumes that individuals are distributed along a spatial continuum rather than discrete demes. PhyREX can be used to estimate population densities and rates of dispersal. Its output can be processed by treeannotator (from the BEAST package) as well as SPREAD.
- Versions: 3.3.20220408
- Website: https://github.com/stephaneguindon/phyml
- Licenses: GPL 3
- Package source: gnu/packages/bioinformatics.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of phyml as follows:
guix install phyml
Or install a particular version:
guix install phyml@3.3.20220408
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
Badge code
You can use the following badge to inform users of phyml about the latest version available in Guix.
Example HTML:
<a href='https://packages.guix.gnu.org/packages/phyml'><img src='https://packages.guix.gnu.org/packages/phyml/badges/latest-version.svg' alt='Version in GNU Guix'></a>
Example Markdown:
[](https://packages.guix.gnu.org/packages/phyml)
Example Org:
[[https://packages.guix.gnu.org/packages/phyml][https://packages.guix.gnu.org/packages/phyml/badges/latest-version.svg]]