r-affxparser
Affymetrix File Parsing SDK
This is a package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
- Versions: 1.82.0
- Website: https://github.com/HenrikBengtsson/affxparser
- Licenses: GPL 2 · LGPL 2.0+ · LGPL 2.1
- Package source: gnu/packages/bioconductor.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of r-affxparser as follows:
guix install r-affxparser
Or install a particular version:
guix install r-affxparser@1.82.0
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
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