r-chippeakanno
Peaks annotation from ChIP-seq and ChIP-chip experiments
The package includes functions to retrieve the sequences around the peak, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as most conserved elements and other transcription factor binding sites supplied by users. Starting 2.0.5, new functions have been added for finding the peaks with bi-directional promoters with summary statistics (peaksNearBDP), for summarizing the occurrence of motifs in peaks (summarizePatternInPeaks) and for adding other IDs to annotated peaks or enrichedGO (addGeneIDs).
- Versions: 3.42.0
- Website: https://bioconductor.org/packages/ChIPpeakAnno
- Licenses: GPL 2+
- Package source: gnu/packages/bioconductor.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of r-chippeakanno as follows:
guix install r-chippeakanno
Or install a particular version:
guix install r-chippeakanno@3.42.0
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
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