r-densvis
Density-preserving data visualization via non-linear dimensionality reduction
This package implements the density-preserving modification to t-SNE and UMAP described by Narayan et al. (2020) <doi:10.1101/2020.05.12.077776>. den-SNE and densMAP aim to enable more accurate visual interpretation of high-dimensional datasets by producing lower-dimensional embeddings that accurately represent the heterogeneity of the original high-dimensional space, enabling the identification of homogeneous and heterogeneous cell states. This accuracy is accomplished by including in the optimisation process a term which considers the local density of points in the original high-dimensional space. This can help to create visualisations that are more representative of heterogeneity in the original high-dimensional space.
- Versions: 1.20.1
- Website: https://bioconductor.org/packages/densvis
- Licenses: Expat
- Package source: gnu/packages/bioconductor.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of r-densvis as follows:
guix install r-densvis
Or install a particular version:
guix install r-densvis@1.20.1
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
Badge code
You can use the following badge to inform users of r-densvis about the latest version available in Guix.
Example HTML:
<a href='https://packages.guix.gnu.org/packages/r-densvis'><img src='https://packages.guix.gnu.org/packages/r-densvis/badges/latest-version.svg' alt='Version in GNU Guix'></a>
Example Markdown:
[](https://packages.guix.gnu.org/packages/r-densvis)
Example Org:
[[https://packages.guix.gnu.org/packages/r-densvis][https://packages.guix.gnu.org/packages/r-densvis/badges/latest-version.svg]]