r-methylaid
Quality control of large Illumina DNA Methylation array data sets
This package provides a visual and interactive web application using RStudio's shiny package. Bad quality samples are detected using sample-dependent and sample-independent controls present on the array and user adjustable thresholds. In depth exploration of bad quality samples can be performed using several interactive diagnostic plots of the quality control probes present on the array. Furthermore, the impact of any batch effect provided by the user can be explored.
- Versions: 1.42.0
- Website: https://git.bioconductor.org/packages/MethylAid
- Licenses: GPL 2+
- Package source: gnu/packages/bioconductor.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of r-methylaid as follows:
guix install r-methylaid
Or install a particular version:
guix install r-methylaid@1.42.0
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
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