r-txdbmaker
Tools for making TxDb objects from genomic annotations
This package provides a set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files). These tools allow the user to download the genomic locations of transcripts, exons, and CDS, for a given assembly, and to import them in a TxDb object. TxDb objects are implemented in the GenomicFeatures package, together with flexible methods for extracting the desired features in convenient formats.
- Versions: 1.2.1
- Website: https://bioconductor.org/packages/txdbmaker
- Licenses: Artistic License 2.0
- Package source: gnu/packages/bioconductor.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of r-txdbmaker as follows:
guix install r-txdbmaker
Or install a particular version:
guix install r-txdbmaker@1.2.1
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
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