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r-zellkonverter

Conversion between AnnData and single-cell experiments objects

This package provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.

Installation

Install the latest version of r-zellkonverter as follows:

guix install r-zellkonverter

Or install a particular version:

guix install r-zellkonverter@1.16.0

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.

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