sambamba

Tools for working with SAM/BAM data

Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. Current parallelised functionality is an important subset of samtools functionality, including view, index, sort, markdup, and depth.

Versions: 0.8.2
Website: https://github.com/biod/sambamba
Licenses: GPL 2+
Package source: gnu/packages/bioinformatics.scm
Builds: See build status
Issues: See known issues

Installation

Install the latest version of sambamba as follows:

guix install sambamba

Or install a particular version:

guix install sambamba@0.8.2

You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.

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