scregseg
Single-cell regulatory landscape segmentation
Scregseg (Single-Cell REGulatory landscape SEGmentation) is a tool that facilitates the analysis of single cell ATAC-seq data by an HMM-based segmentation algorithm. Scregseg uses an HMM with Dirichlet-Multinomial emission probabilities to segment the genome either according to distinct relative cross-cell accessibility profiles or (after collapsing the single-cell tracks to pseudo-bulk tracks) to capture distinct cross-cluster accessibility profiles.
- Versions: 0.1.3-0.78ebff8
- Website: https://github.com/BIMSBbioinfo/scregseg
- Licenses: GPL 3+
- Package source: gnu/packages/bioinformatics.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of scregseg as follows:
guix install scregseg
Or install a particular version:
guix install scregseg@0.1.3-0.78ebff8
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
Badge code
You can use the following badge to inform users of scregseg about the latest version available in Guix.
Example HTML:
<a href='https://packages.guix.gnu.org/packages/scregseg'><img src='https://packages.guix.gnu.org/packages/scregseg/badges/latest-version.svg' alt='Version in GNU Guix'></a>
Example Markdown:
[](https://packages.guix.gnu.org/packages/scregseg)
Example Org:
[[https://packages.guix.gnu.org/packages/scregseg][https://packages.guix.gnu.org/packages/scregseg/badges/latest-version.svg]]