tophat
Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
- Versions: 2.1.1
- Website: https://ccb.jhu.edu/software/tophat/index.shtml
- Licenses: Boost 1.0
- Package source: gnu/packages/bioinformatics.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of tophat as follows:
guix install tophat
Or install a particular version:
guix install tophat@2.1.1
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
Badge code
You can use the following badge to inform users of tophat about the latest version available in Guix.
Example HTML:
<a href='https://packages.guix.gnu.org/packages/tophat'><img src='https://packages.guix.gnu.org/packages/tophat/badges/latest-version.svg' alt='Version in GNU Guix'></a>
Example Markdown:
[](https://packages.guix.gnu.org/packages/tophat)
Example Org:
[[https://packages.guix.gnu.org/packages/tophat][https://packages.guix.gnu.org/packages/tophat/badges/latest-version.svg]]