trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
Trinity assembles transcript sequences from Illumina RNA-Seq data. Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
- Versions: 2.13.2
- Website: https://github.com/trinityrnaseq/trinityrnaseq/wiki
- Licenses: Modified BSD
- Package source: gnu/packages/bioinformatics.scm
- Builds: See build status
- Issues: See known issues
Installation
Install the latest version of trinityrnaseq as follows:
guix install trinityrnaseq
Or install a particular version:
guix install trinityrnaseq@2.13.2
You can also install packages in augmented, pure or containerized environments for development or simply to try them out without polluting your user profile. See the guix shell documentation for more information.
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